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Here is a list of all files with brief descriptions:
arguments.cpp
arguments.h
bufstr.h
cite.cpp
cite.h
clangparser.cpp
clangparser.h
classdef.cpp
classdef.h
classlist.cpp
classlist.h
cmdmapper.cpp
cmdmapper.h
code.h
commentcnv.h
commentscan.h
Interface for the comment block parser
condparser.cpp
condparser.h
config.h
configgen.py
configimpl.h
configoptions.h
constexp.h
context.cpp
context.h
cppvalue.cpp
cppvalue.h
debug.cpp
debug.h
declinfo.h
defargs.h
defgen.cpp
defgen.h
define.cpp
define.h
definition.cpp
definition.h
dia.cpp
dia.h
diagram.cpp
diagram.h
dirdef.cpp
dirdef.h
docbookgen.cpp
docbookgen.h
docbookvisitor.cpp
docbookvisitor.h
docparser.cpp
docparser.h
docsets.cpp
docsets.h
doctokenizer.h
docvisitor.h
dot.cpp
dot.h
doxygen.cpp
doxygen.h
eclipsehelp.cpp
eclipsehelp.h
entry.cpp
entry.h
example.h
filedef.cpp
filedef.h
filename.cpp
filename.h
fileparser.cpp
fileparser.h
filestorage.h
formula.cpp
formula.h
fortrancode.h
fortranscanner.h
ftextstream.cpp
ftextstream.h
ftvhelp.cpp
ftvhelp.h
groupdef.cpp
groupdef.h
growbuf.h
htags.cpp
htags.h
htmlattrib.h
htmldocvisitor.cpp
htmldocvisitor.h
htmlentity.cpp
htmlentity.h
htmlgen.cpp
htmlgen.h
htmlhelp.cpp
htmlhelp.h
image.cpp
image.h
index.cpp
This file contains functions for the various index pages
index.h
language.cpp
language.h
languages.py
latexdocvisitor.cpp
latexdocvisitor.h
latexgen.cpp
latexgen.h
layout.cpp
layout.h
lodepng.cpp
lodepng.h
logos.cpp
logos.h
main.cpp
Main entry point for doxygen
mandocvisitor.cpp
mandocvisitor.h
mangen.cpp
mangen.h
markdown.cpp
markdown.h
marshal.cpp
marshal.h
memberdef.cpp
memberdef.h
membergroup.cpp
membergroup.h
memberlist.cpp
memberlist.h
membername.cpp
membername.h
message.cpp
message.h
msc.cpp
msc.h
namespacedef.cpp
namespacedef.h
objcache.cpp
objcache.h
outputgen.cpp
outputgen.h
outputlist.cpp
outputlist.h
pagedef.cpp
pagedef.h
parserintf.h
perlmodgen.cpp
perlmodgen.h
plantuml.cpp
plantuml.h
portable.cpp
portable.h
Portable versions of functions that are platform dependent
portable_c.c
pre.h
printdocvisitor.h
pycode.h
pyscanner.h
qhp.cpp
qhp.h
qhpxmlwriter.cpp
qhpxmlwriter.h
qtbc.h
reflist.cpp
reflist.h
res2cc_cmd.py
resourcemgr.cpp
resourcemgr.h
rtfdocvisitor.cpp
rtfdocvisitor.h
rtfgen.cpp
rtfgen.h
rtfstyle.cpp
rtfstyle.h
scanner.h
searchindex.cpp
searchindex.h
section.h
sortdict.h
sqlite3gen.cpp
sqlite3gen.h
store.cpp
store.h
tagreader.cpp
tagreader.h
tclscanner.h
template.cpp
template.h
textdocvisitor.cpp
textdocvisitor.h
to_c_cmd.py
tooltip.cpp
tooltip.h
translator.h
translator_adapter.h
translator_am.h
translator_ar.h
translator_br.h
translator_ca.h
translator_cn.h
translator_cz.h
translator_de.h
translator_dk.h
Danish translation
translator_en.h
translator_eo.h
translator_es.h
translator_fa.h
translator_fi.h
translator_fr.h
translator_gr.h
translator_hr.h
translator_hu.h
translator_id.h
translator_it.h
translator_je.h
translator_jp.h
translator_ke.h
translator_kr.h
translator_lt.h
translator_lv.h
translator_mk.h
translator_nl.h
translator_no.h
translator_pl.h
translator_pt.h
translator_ro.h
translator_ru.h
translator_sc.h
translator_si.h
translator_sk.h
translator_sr.h
translator_sv.h
translator_tr.h
translator_tw.h
translator_ua.h
translator_vi.h
translator_za.h
types.h
This file contains a number of basic enums and types
util.cpp
util.h
A bunch of utility functions
version.h
vhdlcode.h
vhdldocgen.cpp
vhdldocgen.h
vhdljjparser.cpp
vhdljjparser.h
xmlcode.h
xmldocvisitor.cpp
xmldocvisitor.h
xmlgen.cpp
xmlgen.h
xmlscanner.h